research
Our body is a complex system. Each cell in our body can have different roles and developmental trajetories, even though they usually have the same genes. The diversity is mainly driven by the way genes are turned on and off in specific places and times. This precious regulation process is controlled by different elements in our genome, through various chemical modifications and conformation changes in DNA or associated proteins, all of which make up what we call the epigenome.
Being able to probe the dynamics of the epigenome in individual cells can provide insights into a cell’s history, and in some cases, predict its future. This knowledge is crucial for mapping the complex landscapes of biological processes, and designing more precise and effective therapies for diseases.
My current research focuses on developing a toolkit to measure various types of epigenetic changes at the single-cell level. This will enable us to capture a comprehensive picture of how these changes influence cell function and disease progression.
Droplet Hi-C
single-cell · single-cell multiome · chromatin conformation · transcriptome
Single-cell method for chromatin structure profiling
Droplet Paired-Tag
single-cell multiome · epigenomics · histone modifications · transcriptome
Single-cell method for joint analysis of histone marks and transcriptome
MiniAtlas: a multimodal histone modification and transcriptome atlas for adult human brain
single-cell multiome · neuroscience · chromatin states · developmental memory
Single-Cell Atlas of Transcription and Chromatin States Reveals Regulatory Programs in the Human Brain
FNIH Heart: dissect regulatory networks underlying heart failures
single-cell multiome · heart failures · gene regulatory networks · chromatin organization · risk variants
Single cell multiomics and chromatin architecture reveal human heart failure gene regulatory programs